PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG139000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 494aa    MW: 51299.4 Da    PI: 6.9116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG139000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-16306352455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Pavir.3KG139000.1.p 306 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 352
                          5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.33E-18298356No hitNo description
Gene3DG3DSA:4.10.280.102.0E-20299360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-21299362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-14306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTGPGDELAE LLWDNGPALR RAPPPFQPFT CSAAGSSRAH ELKRHAAAGG MAPVPLGLHG  60
AGGLPDEDAV PWLHCPVAVD VSDADTAPLP PEYCAGLLSE YSGLQPAPPA AVPASRAAPR  120
EAAAKQATLP GAASGAGEGV MNFTFFSRPL QRPQASAAAA ASNPVESTVV QAATNRLRAT  180
PLFSEQRMAW LQPPKGPRAA APGAAPAPAP QAPLPTEHRL HGEAATVTQC RLQPEARAPD  240
AAAATAVVTT SSVCSGNGDR SQQPKRSSSH QVADCSVSPD EDLDDEGGAM RRSAARSNKR  300
SRTAEVHNLS ERRRRDRINE KMRALQELIP NCNKIDKASM LEEAIEYLKT LQLQVQMMSM  360
GTGLCVPPML LPAMQVPVPH PMAHFPHLGM GLGFGMGAAA AAAFDMARAA GAHFPCPPMP  420
MPPGPMFGVP GQAMPSPAAA AWAHMAGSGT TPAEHIEAAA APPAREEAEP LPPPVPVVTQ  480
GDQIQKLQHP KQT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960433.20.0PREDICTED: transcription factor APG-like
SwissprotQ6AT902e-88APG_ORYSJ; Transcription factor APG
TrEMBLK3Z4X60.0K3Z4X6_SETIT; Uncharacterized protein
STRINGGRMZM2G062541_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-33phytochrome interacting factor 3